Research indicates that common medications can significantly alter gut microbiomes, with effects lasting for several years. A study led by genomicist Oliver Aasmets from the University of Tartu reveals that not only antibiotics but also various other medications can disrupt the delicate balance of microbial communities in our intestines. This disruption can have lasting consequences, affecting overall health and well-being.
The study analyzed the medical records of 2,509 participants from the Estonian Biobank. The researchers observed shifts in the gut microbiomes of individuals who altered their medication regimens, pointing to a potential causal relationship. Out of the 186 drugs examined, 167—or nearly 90 percent—were linked to changes in gut microbiome samples. This finding highlights the significant impact that medications can have on the gut environment.
Long-Lasting Effects of Medication on Microbiome Diversity
Aasmets and his team noted that human-targeted medications, including antidepressants, proton pump inhibitors, and benzodiazepines, appear to reduce microbial diversity by eliminating specific taxa. For instance, the effects of benzodiazepines, commonly used to treat anxiety, were found to be comparable to those of broad-spectrum antibiotics, which are notorious for their detrimental effects on gut health. Interestingly, not all benzodiazepines produced the same level of disruption. The research indicated that alprazolam (brand name Xanax) had a more pronounced impact on gut microbiome diversity than diazepam (brand name Valium). This suggests a need for careful consideration when prescribing these medications, balancing their therapeutic benefits against potential harm to gut health.
The researchers also identified that the intensity of medication usage correlates with the degree of microbiome alteration. As Aasmets noted, “The more a medication is used, the stronger the impact on the microbiome.” The study revealed both carryover and additive effects, meaning that ongoing use of certain medications can compound their influence on gut health over time.
Implications for Future Research and Clinical Practice
Previous animal studies have suggested that long-term antibiotic use may contribute to disruptions in the gut’s mucosal lining, which can lead to weight gain and other health issues. Aasmets and his team advocate for further research to better understand the implications of prolonged exposure to various drug classes on gut microbiomes. They emphasize that most existing microbiome studies typically focus on current medication use, neglecting the potential impact of past drug use.
“We hope this encourages researchers and clinicians to factor in medication history when interpreting microbiome data,” Aasmets stated. This study, published in the journal mSystems, encourages a broader view of how medications affect not only individual health but also the complex ecosystems within our bodies.
The findings underscore the importance of considering the long-term effects of medications on gut health, as these impacts can be a crucial factor in explaining individual differences in microbiome composition. As our understanding of the gut microbiome continues to evolve, the need for a holistic approach in treatment plans becomes increasingly clear.


































